3  Workflow

Describe the Shiny framework used in the app and its benefits for creating interactive web applications.

graph TD

  Z([FlowJo])
  Y([OMIQ])

 subgraph Cells
  
  OB(concatened file)
  OC(features files)
  MA(metadata)
  OA(rds file)

 end 

 
    subgraph AnalyCyte
        B1[Data Import] --> B2[Data Processing]
        B1 --> B3[Phantasus Export]
        B2 --> C[Automated HTML Analysis Reports]     

          subgraph analycyte.projects
        
        C --> D[QC]
        C --> E[DA]
        C --> F[DS]
         end
    
    analycyte.projects -->  B4[Project Export] 

    
end
    
  Z --> Cells
  Y --> Cells 
  Cells --> B1  
    
    
 click B1 href "sec_mod_import_concat.html"
 click B3 href "sec_mod_export_ph.html"

 click Z href "a1-flowjo.html"
 click Y href "a2-omiq.html"

 click D href "sec_mod_qc.html"
 click E href "sec_mod_da.html"
 click F href "sec_mod_ds.html"

 click B4 href "sec_mod_project_to_export.html"