From e697298815596aba1dfa0b506d3863a570a75852 Mon Sep 17 00:00:00 2001
From: Benoit Goutorbe <b.goutorbe@alphabio.fr>
Date: Mon, 28 Jun 2021 19:16:21 +0200
Subject: [PATCH] update on figures number, and labels of solutions in the
plot, to be consistent with final manusctipt
---
statistical-analysis.Rmd | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/statistical-analysis.Rmd b/statistical-analysis.Rmd
index 51778fe..419b94f 100755
--- a/statistical-analysis.Rmd
+++ b/statistical-analysis.Rmd
@@ -228,7 +228,7 @@ col=rep("black", nsamples(ps.filt))
col[sample_data(ps.filt)$Patient %in% c("SS01", "SS02", "SS03", "SS07", "SS11", "SS13", "SS12", "SS14")] = "gray70"
col[sample_names(ps.filt) %in% c("SS01Sc1-3", "SS02Sc1-3", "SS04Dc3-3")] = "red"
-pdf(file = "figures-article/figureS5.pdf", width = 9, height = 9, pointsize = 10)
+pdf(file = "figures-article/figureS6.pdf", width = 9, height = 9, pointsize = 10)
plot(ape::as.phylo(hclust(phyloseq::distance(rarefy_even_depth(ps.filt, rngseed = T), method = "bray"))), type="radial", cex = 0.5, tip.color = col)
dev.off()
--
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